Re: NAMD on TACC (Darter)

From: Jim Phillips (jim_at_ks.uiuc.edu)
Date: Tue Dec 08 2015 - 22:15:15 CST

/nics/b/home/jphillip/NAMD_scripts/runbatch is the current script for
Darter. There is no runbatch_2.8 in that directory anymore.

PPN is cores per node, PROCSPERNODE is processes per node.

Jim

On Tue, 8 Dec 2015, Chitrak Gupta wrote:

> Dear NAMD developers,
>
> I am trying to run NAMD on TACC (Darter). I am looking at the runbatch
> script located at
>
> /nics/b/home/jphillip/NAMD_scripts/runbatch_2.8
>
>
> on Darter. I got this location from the following page
>
> http://www.ks.uiuc.edu/Research/namd/wiki/index.cgi?NamdAtNICS
>
>
> Could you verify whether this is updated for the current build on Darter? I
> am asking because looks like this one is trying to run on 32 nodes although
> Darter only has 16.
>
> Also, what is the difference between $PPN and $PROCSPERNODE variables in
> this code?
>
>
>
> Best regards,
> Chitrak.
>

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