sausage plot for a namd trajectory in vmd

From: luca belmonte (lucabelmonte_at_gmail.com)
Date: Fri Jul 31 2015 - 05:01:02 CDT

Dear all,

I have to represent fluctuations of small molecules around prostetic group.
I began with the time step, as showed in many namd tutorials, but this is
unsatisfactory for this specific case.

So, I was wondering if there is a way to represent the whole trajectory as
a sausage plot, like the ones usually used for NMR.

Could you share your experience regarding this issue with me?

Thank you for all your comments,
Best regards,
Luca

-- 
Luca Belmonte, PhD
CIBIO - Center for Integrative Biology
University of Trento
Phone: +39 0461 28 53 41
Mobile: +39 328 45 81 762

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