From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Mon Nov 16 2015 - 01:52:00 CST
Most likely the NAMD load balancer fails on your side. To verify please add "ldbperiod 100000000" to your namd config and see if this stops the behavior.
> -----Ursprüngliche Nachricht-----
> Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im
> Auftrag von Thomas Albers
> Gesendet: Montag, 16. November 2015 02:11
> An: Namd Mailing List <namd-l_at_ks.uiuc.edu>
> Betreff: namd-l: time per step during GPU-accelerated Implicit Solvent
> I am looking at a 200-residue protein using implicit solvent. With 4
> cores (Xeon E5504) and GPU acceleration (GTX 660), time per step is
> initially 0.01 s, but after a few 100000 steps climbs to 0.025 steps
> and more. No other program is taking up CPU cycles, and there's no
> screensaver or anything that might tax the graphics card. What would
> cause this strange behaviour, and what should be done?
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