substrate and membrane protein

From: Lucía Díaz (
Date: Mon Nov 02 2015 - 08:03:28 CST

Dear all,

I would like to know if it is possible with NAMD to apply an acceleration
along the z axis on the backbone of a substrate. The idea is to force its
movement during the first ns of the MD towards the entrance of a membrane
protein. I've seen this strategy in some publications and I would like to
know how to do it with NAMD.

Thank you all in advance,


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