From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Fri Oct 09 2015 - 12:42:43 CDT
Ah yes, thanks!
Gianluca
On Fri, 9 Oct 2015, Josh Vermaas wrote:
> NAMD doesn't read a topology file. It reads a psf, which lists all the
> interactions explicitly. This includes a BONDS section that lists all the
> bonds. Is this what you mean?
>
> -Josh
>
> On 10/09/2015 12:42 AM, Gianluca Interlandi wrote:
>> I understand that NAMD treats the keywords BONDS and DOUBLE as synonyms
>> when it reads a CHARMM topology file. Can somebody please point me to the
>> location in the code where NAMD reads this?
>>
>> Thanks,
>>
>> Gianluca
>>
>> -----------------------------------------------------
>> Gianluca Interlandi, PhD gianluca_at_u.washington.edu
>> +1 (206) 685 4435
>> http://artemide.bioeng.washington.edu/
>>
>> Research Assistant Professor at the Department of Bioengineering
>> at the University of Washington, Seattle WA U.S.A.
>> -----------------------------------------------------
>>
>
>
-----------------------------------------------------
Gianluca Interlandi, PhD gianluca_at_u.washington.edu
+1 (206) 685 4435
http://artemide.bioeng.washington.edu/
Research Assistant Professor at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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