Recomposing the system splitted by periodicity

From: Francesco Pietra (
Date: Thu Jun 11 2015 - 04:34:57 CDT

Is any way available to NAMD - before continuing MD - to recompose in the
same periodic box the whole system, made of homotetramer, ligands, water,
where a protein unit, and some ligands, after 300ns appear in adiacent
periodic box? Or is that matter for post analysis only, such as by VMD?

francesco pietra

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