Hamiltonian Replica Exchange MD Simulation in NAMD

From: Fidan Sumbul (fidansumbul_at_gmail.com)
Date: Fri Jan 23 2015 - 13:04:19 CST

Dear NAMD Users,

I would like to start a Hamiltonian Replica Exchange Molecular Dynamics
Simulation in NAMD. I searched through both the mail list and the tutorials
in NAMD tutorials webpage. However, I could not find any source to begin
with. I will appreciate if you send me a link or a tutorial file or juct a
simple configuration file that I can follow to start a simulation in NAMD.

Thank you in advance,


Fidan Sumbul
PhD Student and T.A.
Polymer Research Center
Department of Chemical Engineering
Bogazici University

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