AW: FATAL ERROR: seek failed while writing DCD file: No such file or directory

From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Fri Dec 19 2014 - 00:35:26 CST

Did this error occur more often than only this one time? If not, ignore it.

Norman Geist.

> -----Ursprüngliche Nachricht-----
> Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im
> Auftrag von Douglas Houston
> Gesendet: Donnerstag, 18. Dezember 2014 21:40
> An: namd-l_at_ks.uiuc.edu
> Betreff: namd-l: FATAL ERROR: seek failed while writing DCD file: No
> such file or directory
>
>
> What might cause this error after 4 days of perfectly stable running?
>
>
>
> ENERGY: 46995750 11.9575 24.2251 13.3193
> 2.0010
> -7508.1727 660.7055 0.0000 0.0000
> 1292.5420
> -5503.4224 316.3603 -6795.9644 -5500.2671
> 309.1678
> 40.4566 74.5755 20513.9582 -13.2123
> -13.1010
>
> ------------- Processor 0 Exiting: Called CmiAbort ------------
> Reason: FATAL ERROR: seek failed while writing DCD file: No such file
> or directory
>
> Charm++ fatal error:
> FATAL ERROR: seek failed while writing DCD file: No such file or
> directory
>
> PRESSURE: 46996000 515.269 -916.628 -377.656 -916.628 -425.468
> -292.049 -377.65
> 6 -292.049 1306.75
> GPRESSURE: 46996000 838.768 -953.714 96.0755 -560.366 -409.768
> -323.975 -1019.3
> 4 -150.47 1064.65
> PRESSAVG: 46996000 -4.66517 -78.6176 -210.973 -78.6176 -76.796 264.706
> -210.973
> 264.706 168.085
> GPRESSAVG: 46996000 -4.93746 -79.6884 -210.48 -78.943 -73.9752 267.019
> -209.898
> 265.595 165.364
> ENERGY: 46996000 7.8038 30.5784 14.2287
> 3.5330
> -7659.5336 751.1412 0.0000 0.0000
> 1325.1116
> -5527.1369 324.3320 -6852.2485 -5524.1883
> 314.2416
> 465.5161 497.8826 20432.6083 28.8746
> 28.8170
>
> WRITING EXTENDED SYSTEM TO RESTART FILE AT STEP 46996000
> WRITING COORDINATES TO DCD FILE ionized_run2.dcd AT STEP 46996000
> FATAL ERROR: seek failed while writing DCD file: No such file or
> directory
>
>
>
> The file is there in the correct directory. I restarted the job and it
> appears to be running again quite happily.
>
> I'm running Windows 7 64 bit; reading/writing to a local drive;
> "NAMD_2.10_Win64-multicore/namd2 +p4 namdrun.conf" is the command I
> used.
>
>
>
> --
> The University of Edinburgh is a charitable body, registered in
> Scotland, with registration number SC005336.

This archive was generated by hypermail 2.1.6 : Thu Dec 31 2015 - 23:21:29 CST