Re: Atomselect for coor, vel, xsc

From: Josh Vermaas (
Date: Fri Nov 14 2014 - 08:58:29 CST

Not that I'm aware of, but you could use VMD to read in the coor and vel
files, and then only write out the subset of atoms you are interested in
(I think its $sel writenamdbin ...). The xsc file is a lost cause
though. You are shrinking your box, so you'll need to write a new one
that has the appropriate dimensions rather than the ones you started with.
On 11/13/2014 10:49 PM, Kevin C Chan wrote:
> Dear NAMD users,
> I have run quite a long simulation of a complex system and I do not
> want to "waste" it. I would like to continue the simulation with only
> part of my previous system. Does it exist any option of “atomselect"
> for the NAMD binaries (coor, vel, xsc) so I could use them for
> continuation?
> Thanks a lot,
> Kevin
> <>

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