automatic extraction of RMSD values of the heavy atoms of residues from NAMD output?

From: Andras Borosy (andras.borosy_at_givaudan.com)
Date: Mon Aug 04 2014 - 05:32:53 CDT

Dear all,

As a beginner I may ask something very trivial again. I have my NAMD
output files in a folder. I wish to extract of RMSD values of the heavy
atoms of residues from all NAMD outputs automatically. I found some hints
(like http://2009.igem.org/Team:EPF-Lausanne/Scripts) but I do not want to
do it manually with many dozens of outputs.

Best regards,

Dr. András Péter Borosy
Scientific Modelling Expert

Fragrance Research
Givaudan Schweiz AG - Ueberlandstrasse 138 - CH-8600 - Dübendorf -
Switzerland
T:+41-44-824 2164 - F:+41-44-8242926 - http://www.givaudan.com

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