Re: Generalized Born Implicit solvation with implicit membrane

From: Thomas Evangelidis (
Date: Fri Mar 14 2014 - 14:22:36 CDT

Not to my knowledge. CHARMM does what you seek.
Στις 14 Μαρ 2014 3:31 ΜΜ, ο χρήστης "Fotis Baltoumas" <> έγραψε:

> Dear NAMD community,
> Is there a way to perform, through NAMD, a GBIS simulation for a
> transmembrane protein using an implicit membrane model? I am talking about
> setting the properties (or boundaries) a membrane-like slab, like it is
> done in APBSmem or PBEQ (CHARMM-GUI) for PB electrostatics, or the
> Implicit Solvent modeller (CHARMM-GUI) for Generalized Born membrane
> solvation.
> If it can be done, I would be grateful if someone could point me to the
> right direction (or at least, at the appropriate page of the User's Guide,
> although so far I haven't found anything relevant, at least I think so).
> Thank you in advance,
> Fotis

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