From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Mon Feb 10 2014 - 07:32:10 CST
So all your mds do definitely write to the same file system. So the problem must be elsewhere. Do you know if this is a samba /nfs share (file server) or physical local disk?
Norman Geist.
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von BATUHAN KAV
Gesendet: Montag, 10. Februar 2014 13:44
An: Norman Geist
Cc: Namd Mailing List
Betreff: Re: namd-l: Log file is not being updated
Hi,
Output is
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/mapper/cx4_scratchp1 4432139644 2520934916 1686064968 60% /mnt/scratch
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/mapper/cx4_scratchp1 4432139644 2520939184 1686060700 60% /mnt/scratch
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/mapper/cx4_scratchp1 4432139644 2520939708 1686060176 60% /mnt/scratch
On Mon, Feb 10, 2014 at 2:42 PM, Norman Geist <norman.geist_at_uni-greifswald.de> wrote:
A different directory doesn’t imply a different disk/filesystem. What’s the output of
df simulation1_dir
df simulation2_dir
df simulation3_dir
Norman Geist.
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von BATUHAN KAV
Gesendet: Montag, 10. Februar 2014 13:02
An: Ajasja Ljubetič
Cc: namd-l
Betreff: Re: namd-l: Log file is not being updated
Hello Ajasja,
No, all three log files are in different directories. And, no, outputEnergies and all other parameters are the same for all three.
The point is, at the beginning all three log files were regularly updated, but then one of them suddenly stopped being updated.
Regards,
Batuhan
On Mon, Feb 10, 2014 at 1:53 PM, Ajasja Ljubetič <ajasja.ljubetic_at_gmail.com> wrote:
Hi,
Are all three log files being written to the same disk and file system?
Perhaps you have accidentally set outputEnergies to some high number in the configuration file for the third simulation?
Best regards,
Ajasja
On 10 February 2014 12:41, BATUHAN KAV <bkav13_at_ku.edu.tr> wrote:
Dear All,
We're running NAMD 2.8. The problem is that, after a while in simulations, log files are not being updated.
I'm running three simulations now. log files of the first two are regularly updated as the simulations progress; I can see at which timestep I am. On the other hand, for the third simulation, log file is not being updated for a week. Therefore, I cannot see the timesteps etc. However, all other files like .dcd, .coor and .vel files are updated, so it seems like the simulation is on progress.
What might be the reason for that?
Thank you and cheers,
Batuhan
_____
Diese E-Mail ist frei von Viren und Malware, denn der avast! Antivirus <http://www.avast.com/> Schutz ist aktiv.
--- Diese E-Mail ist frei von Viren und Malware, denn der avast! Antivirus Schutz ist aktiv. http://www.avast.com
This archive was generated by hypermail 2.1.6 : Wed Dec 31 2014 - 23:22:05 CST