Re: Structure size limitation in NAMD

From: Axel Kohlmeyer (
Date: Wed Jan 29 2014 - 21:00:46 CST

On Wed, Jan 29, 2014 at 9:36 PM, Nithyanan Annamalai
<> wrote:
> Hi, I'm still at learning in using NAMD for my research. My research is
> focus on molecular dynamic simulation of a dimer protein. I want to know is
> it possible for me to run a dimer structure in NAMD?
> And if there is a limitation for size of protein structure, may i know how
> much the applicable size of structure that can be run using NAMD.

you probably won't have a computer large enough to run the largest
possible system. check out this link (which is featured on the NAMD

> I'm sorry if the question i posted here sounds to noob. Hopefully there are
> good hearts willing to help me.. Thank you very much for your kindness.

Dr. Axel Kohlmeyer
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.

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