Add acetyle and amin Group to peptide

From: Alireza Mansouri (
Date: Mon Dec 30 2013 - 03:30:19 CST

Hi NAMD USER I am going to add Acetyle and Amin group for N-terminal and C-terminal to peptide. But the problem is that after preparation of pdb file (preparation by Hyperchem OR Gabedit) during construction to psf the added groups autonomously are removed by command segment U {pdb         .....pdb} . Any one can help me in this problem? A.R.Manssouri

This archive was generated by hypermail 2.1.6 : Wed Dec 31 2014 - 23:22:01 CST