From: Hannes Loeffler (Hannes.Loeffler_at_stfc.ac.uk)
Date: Wed Nov 06 2013 - 03:25:23 CST
On Wed, 6 Nov 2013 00:56:43 -0800
Ramin Ekhteiari <ramin_ekh_at_yahoo.com> wrote:
> Hi dears,
>
> I did a MD simulation for my system by employing NAMD code and got
> dcd and other output files, but now I am trying to do a MM-PBSA
> calculation for this system, so can someone advise me on how to do
> these calculation via vmd?
Search the mailing list archives as this comes up quite regularly and
the answer is somewhat involved.
E.g.
http://www.ks.uiuc.edu/Research/namd/mailing_list/namd-l.2013-2014/index.html#1606
Cheers,
Hannes.
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