Reg VDw Parameters

From: Vidhya Sankar (vidhyasankar7928_at_yahoo.com)
Date: Fri Sep 27 2013 - 11:18:30 CDT

Dear Namd user            Thank you for your previous reply When i run the namd for my membrane protein using the following command ./charmrun  namd2 ++local p8 equlibation.conf I have go the following error  DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Which  file Should i go and Edit ( i think the atom type tip water oxygen) i am using the  par_all38_lipid.prm and top_all36_lipid.rtf files Thanks in Advance

This archive was generated by hypermail 2.1.6 : Wed Dec 31 2014 - 23:21:43 CST