From: ½ùÏþ½Ü (jinxj10_at_lzu.edu.cn)
Date: Mon Aug 26 2013 - 02:44:23 CDT
We simulated a pentamer protein with NAMD. I am confused about that some part of the pemtamer fluctuated in and out of the box. I dealed with pbctools in vmd and failed. The command used are at below.
package require pbctools
pbc readxst xstfile
pbc wrap -all
The unrecognizable code was displayed when I opened the processed trajectory using VMD.
Would you tell me the reason and the solution?
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