From: Vibhor Agrawal (vibhora_at_g.clemson.edu)
Date: Fri Jun 21 2013 - 11:34:22 CDT
Thanks all for your valuable suggestion.
One of the problems I'm having using CHARMM_GUI is since I modelled my
protein and have patched it with ACP and CT1 the charmm-gui .I have the
HETATM of PALM as the last residue .I created psf and pdb file using the
VMD.but the charmm gui is not able to recognise that.
Any Suggestion will be really helpful
On Fri, Jun 21, 2013 at 4:17 AM, Ramin Ekhteiari <ramin_ekh_at_yahoo.com>wrote:
> Hi Vibhor,
>
> You can try with charmm membrane builder.
> http://www.charmm-gui.org/?doc=input/membrane.
>
>
> Good luck,
> Ramin
>
>
> ------------------------------
> *From:* Vibhor Agrawal <vibhora_at_g.clemson.edu>
> *To:* Namd List <namd-l_at_ks.uiuc.edu>
> *Sent:* Thursday, June 20, 2013 11:29 PM
> *Subject:* namd-l: Insertion of GPCR in the POPC Bilayer
>
> hello all:
>
> I'm trying to embed my GPCR in the POPC membrane but I have trouble
> inserting it and don't know the correct way of doing it.It would be great
> if someone can bail me out.
>
> Thanks
> Vibhor
>
>
>
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