Coarse-grained reverse transformation

From: Fugui (
Date: Sat May 11 2013 - 10:21:04 CDT

Dear NAMD users,
I tried to converse a coarsed grained protein structure into an all-atom protein structure by using VMD. Firstly, i used the coarsed grained structure and the all-atom structure which is original structure before the MD simulation to get a starting structure which is shown in the attached pdf file. There are several long C-C bond which can cause problem in the annealing simulation in the next step. Did anyone meet the problem before?
Any suggestion is appreciated.
Best wishes

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