NamdMemoryReduction - genCompressedPsf

From: Sridhar Kumar Kannam (srisriphy_at_gmail.com)
Date: Sun Mar 10 2013 - 16:10:42 CDT

Hi All,

I am having a system with 3 million atoms. To use memory optimised version
of NAMD, first I need to compress psf file.
I followed the instructions on this web page -
http://www.ks.uiuc.edu/Research/namd/wiki/?NamdMemoryReduction
I am running the first step - genCompressedPsf - on a node with 1 TB
memory, still it is giving the error - {snd:8,rcv:0} Reason: FATAL ERROR:
Memory allocation failed on processor 0.

Any suggestions please

-- 
Cheers !!!
Sridhar  Kumar Kannam :)

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