Re: How to split large NAMD DCD file

From: Michael Purdy (mdp3w_at_virginia.edu)
Date: Thu Jan 24 2013 - 11:06:33 CST

You can use catdcd

http://www.ks.uiuc.edu/Development/MDTools/catdcd/

or load less than every frame: VMD right click molecule > load data >
enter desired stride value

Michael
On 01/24/2013 11:49 AM, snoze pa wrote:
> Dear NAMD users,
>
> I have a large DCD file, close to 100GB which is difficult to read in
> VMD. Is there any tool so that I can split the DCD file into 5GB ot
> 10GB small number of DCD files.
>
> Thank you very much,
> S

-- 
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Michael Purdy
University of Virginia
480 Ray C. Hunt Dr., Rm 320
Charlottesville, VA 22903
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