Re: AW: H-bonds cutoff angle criterian. .

From: Anurag Sharma (Anurag.Sharma_at_my.ndsu.edu)
Date: Mon Jan 21 2013 - 01:11:46 CST

Thank you for the answers and sorry for the wrong list. Yes, VMD calculates 180 as 0.

Anurag

Sent from my iPhone

On Jan 21, 2013, at 1:07 AM, "Martin, Erik W" <Erik.Martin_at_STJUDE.ORG> wrote:

> It's actually not that intuitive. I'm pretty sure the angle in question is measured from 180 (in other words 180 is 0)... But yes, probably more a VMD question
>
> Sent from my iPhone
>
> On Jan 20, 2013, at 11:48 PM, "Norman Geist" <norman.geist_at_uni-greifswald.de<mailto:norman.geist_at_uni-greifswald.de>> wrote:
>
> Isnít it a VMD question?
>
> Thereís a manual about it, too. I guess the angle was measured donor-acceptor-hydrogen. So if you want 120, set 120 and see if you get the expected view.
>
> Norman Geist.
>
> Von: owner-namd-l_at_ks.uiuc.edu<mailto:owner-namd-l_at_ks.uiuc.edu> [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Anurag Sharma
> Gesendet: Sonntag, 20. Januar 2013 17:54
> An: namd-l-digest_at_ks.uiuc.edu<mailto:namd-l-digest_at_ks.uiuc.edu>
> Betreff: namd-l: H-bonds cutoff angle criterian
>
>
> I have a problem in representing the HBonds. If I want to represent cutoff angle = 120 then what cutoff angle should I enter in VMD graphic representation. is it 120 or 60.
>
>
>
> Thanks
>
>
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