DNA terminals and charges

From: Siri Søndergaard (siris2501_at_gmail.com)
Date: Tue Jan 15 2013 - 20:45:40 CST


I'm about to run simulations on DNA and was wondering what the terminals
should be like? The CHARMM topology does not have a patch for charged
phosphate terminals but when the pH is ~7 shouldn't the terminal phosphates
have a charge of -2?


Siri Soendergaard

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