Error with dummy atoms

From: George Patargias (gpat_at_bioacademy.gr)
Date: Wed Nov 27 2013 - 11:07:40 CST

Hello

I am using the Magnesium-dummy atoms representation and I get thee error

FATAL ERROR: child atom 31648 bonded only to child H atoms

which is one of the dummy atoms. Do you know what should I do?

Do I need to make the change in Molecule.C, line 5539 as mentioned here?

http://www.ks.uiuc.edu/Research/namd/wiki/?NamdTroubleshooting

Thanks.

George

Dr. George Patargias
Postdoctoral Researcher
Biomedical Research Foundation
Academy of Athens
4, Soranou Ephessiou
115 27
Athens
Greece

Office: +302106597568

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