From: Vidhya Sankar (vidhyasankar7928_at_yahoo.com)
Date: Sat Sep 28 2013 - 03:52:32 CDT
Hai namd users,
Thank you for your previous reply
I am doing Protein-lipid simulation in namd using charmm36 ff
But When i run equilibration it hangs beyond certain line as follows But curser blinks in terminal Nothing has been read by pro gramme
Info: SUMMARY OF PARAMETERS:
Info: 182 BONDS
Info: 483 ANGLES
Info: 849 DIHEDRAL
Info: 39 IMPROPER
Info: 6 CROSSTERM
Info: 82 VDW
Info: 0 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS ( after this Line the programme does not show any progress )
it means it does not read Psf and pdb file (The following lines have not been displayed by programme)
Info: TIME FOR READING PSF FILE: 1.14565
Info: TIME FOR READING PDB FILE: 0.158848
Info:
Info: ****************************
How to solve the problemsThanks in Advance
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