Re: NAMD related

From: Anilkumar Naik (anilkumar.j.naik_at_gmail.com)
Date: Tue Jun 11 2013 - 00:16:33 CDT

Thanks for reply.

TCL installed and LD_LIBRARY_PATH is set. But still having these errors.

$echo $LD_LIBRARY_PATH
/users/home/anilkumar/NAMD_CVS-2013-06-10_Source/fftw/lib:/usr/lib64

$ls /usr/lib64/libtcl8.5.so
/usr/lib64/libtcl8.5.so

No binary found for IBM power7 arch. That's the reason for source
compilation.

charm++ runs very smooth. NAMD is having little issues. I will give one
more attempt by installing TCL in $home/tcl area.

Regards,
Anilkumar

On Mon, Jun 10, 2013 at 8:54 PM, Norman Geist <
norman.geist_at_uni-greifswald.de> wrote:

> Hi,****
>
> ** **
>
> you just seem to not have TCL installed, or not the directory containing
> it, is not in your LD_LIBRARY_PATH. These are linux basics and not related
> to namd. Why donít you use a precompiled version of namd?****
>
> ** **
>
> Norman Geist.****
>
> ** **
>
> *Von:* owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] *Im
> Auftrag von *Anilkumar Naik
> *Gesendet:* Montag, 10. Juni 2013 13:35
> *An:* Namd Mailing List
> *Betreff:* namd-l: NAMD related****
>
> ** **
>
> Dear All,****
>
> ** **
>
> I am trying to run NAMD as non root user. So may be missing some path or
> linking that causing below errors. Sorry for asking simple question. ****
>
> ** **
>
> Using charm as:****
>
> ./build charm++ mpi-linux-ppc mpicxx -j8 --with-production****
>
> ** **
>
> Using NAMD_2.9_Source as:****
>
> /config Linux-PPC-MX64-xlc64.arch --charm-base ./charm-6.4.0 --charm-arch
> mpi-linux-ppc-mpicxx --arch-suffix ppc64****
>
> ** **
>
> Attached NAMD make config, NAMD arch and PATH setting files.****
>
> ** **
>
> Pl give some help to understand below errors. This is will very helpful
> for us to start using NAMD on IBM Linux-Power 7 arch. Looking forward for
> some reply. ****
>
> ** **
>
> =================****
>
> obj/tcl_psfgen.o:(.text+0x7814): undefined reference to `Tcl_NewStringObj'
> ****
>
> obj/tcl_psfgen.o:(.text+0x7828): undefined reference to
> `Tcl_ListObjAppendElement'****
>
> obj/tcl_psfgen.o:(.text+0x7894): undefined reference to `Tcl_AppendResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x7920): undefined reference to `Tcl_Merge'****
>
> obj/tcl_psfgen.o:(.text+0x7938): undefined reference to `Tcl_Eval'****
>
> obj/tcl_psfgen.o:(.text+0x7944): undefined reference to `Tcl_Free'****
>
> obj/tcl_psfgen.o:(.text+0x7958): undefined reference to `Tcl_Merge'****
>
> obj/tcl_psfgen.o:(.text+0x7970): undefined reference to `Tcl_Eval'****
>
> obj/tcl_psfgen.o:(.text+0x797c): undefined reference to `Tcl_Free'****
>
> obj/tcl_psfgen.o:(.text+0x7a9c): undefined reference to `Tcl_SetResult'***
> *
>
> obj/tcl_psfgen.o:(.text+0x7ae8): undefined reference to `Tcl_AppendResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x7b1c): undefined reference to `Tcl_AppendResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x80fc): undefined reference to `Tcl_NewIntObj'***
> *
>
> obj/tcl_psfgen.o:(.text+0x810c): undefined reference to `Tcl_SetObjResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x8150): undefined reference to `Tcl_AppendResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x8178): undefined reference to `Tcl_AppendResult'
> ****
>
> obj/tcl_psfgen.o:(.text+0x81b8): undefined reference to `Tcl_AppendResult'
> ****
>
> gmake: *** [psfgen] Error 1****
>
> gmake: *** Waiting for unfinished jobs....****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> 1500-036: (I) The NOSTRICT option (default at OPT(3)) has the
> potential to alter the semantics of a program. Please refer to
> documentation on the STRICT/NOSTRICT option for more information.****
>
> =================****
>
> ** **
>
> Regards,****
>
> Anilkumar****
>

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