From: Yarrow Madrona (amadrona_at_uci.edu)
Date: Thu May 09 2013 - 19:25:57 CDT
Hello NAMD Gurus,
I have created 5 DCD's in succession by restarting from the previous
restart files. Any help would be appreciated. I can't figure out why it
can't write the restart files for the sixth run.
However, on the sixth run i get the following error message:
FINISHED WRITING RESTART COORDINATES
WRITING VELOCITIES TO RESTART FILE AT STEP 2993000
FINISHED WRITING RESTART VELOCITIES
WRITING EXTENDED SYSTEM TO RESTART FILE AT STEP 2993000
WRITING COORDINATES TO DCD FILE AT STEP 2994000
WRITING COORDINATES TO RESTART FILE AT STEP 2994000
FATAL ERROR: Error on write to binary file eq006.restart.coor:
Input/output error
[0] Stack Traceback:
[0:0] _Z8NAMD_errPKc+0xba [0x53de7a]
[0:1] _ZN6Output10coordinateEiiP6VectorP11FloatVectorR7Lattice+0xb5d
[0xa00a5d]
[0:2]
_ZN24CkIndex_CollectionMaster39_call_receivePositions_CollectVectorMsgEPvP16CollectionMaster+0xcde
[0x54fb1e]
[0:3] _Z15_processHandlerPvP11CkCoreState+0x810 [0xb36e90]
[0:4] CsdScheduler+0x411 [0xc37a21]
[0:5] _ZN9ScriptTcl7Tcl_runEPvP10Tcl_InterpiPPc+0x25d [0xa77fdd]
[0:6] TclInvokeStringCommand+0x88 [0xc8a128]
[0:7] [0xc8cd47]
[0:8] [0xc8e162]
[0:9] Tcl_EvalEx+0x16 [0xc8e986]
[0:10] Tcl_FSEvalFileEx+0x151 [0xcf0b31]
[0:11] Tcl_EvalFile+0x2e [0xcf0cee]
[0:12] _ZN9ScriptTcl4loadEPc+0xf [0xa7655f]
[0:13] main+0x425 [0x541e85]
[0:14] __libc_start_main+0xfd [0x35f4e1ecdd]
[0:15] [0x4fafe9]
TACC: MPI job exited with code: 1
TACC: Shutdown complete. Exiting.
28794,1
Bot
-- Yarrow Madrona Graduate Student Molecular Biology and Biochemistry Dept. University of California, Irvine Natural Sciences I, Rm 2403 Irvine, CA 92697
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