Patching N- and C-Terms and their parameters

From: Peterson J (peterson.jjjj_at_gmail.com)
Date: Thu May 02 2013 - 18:28:25 CDT

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Hi NAMD Users,

I'm quite new to NAMD and in the process of simulating a system with
patches on N-term and C-term with ACE and CT3, respectively. I have created
the psf file. But while I try running the simulation with my conf file, I
encouter with an error for missing bond between C and CO of acetyl group. I
haven't found any par file obtained from the charmm FF files.

How do I deal with this problem?

Thanks,

Peterson J

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