From: Nicholas M Glykos (glykos_at_mbg.duth.gr)
Date: Fri Jan 11 2013 - 02:57:26 CST
> I know that stride computes this data, but I'm not sure where its
> stored, or how to access it in a script.
Recent versions of carma can produce a file containing secondary structure
assignments from stride (you'll need an executable named 'stride' in the
path (and a linux machine)). The file will look like this (one line per
frame, one char per residue) :
GGGGGGGGGHTT TTTTTTTTTTTTT
TTGGGGGGGGGTTT TTTTTTTTTTGGG
TTGGGTTTGGGTTT TTTTTTTGGG
TTTGGGGGGGGGTTT TTTTTTTGGG
TTGGGGGGGGGGTTTT TTTTTTTGGG
GGGGG GGGGTTTT TTTTTTTGGG
...............
--
Nicholas M. Glykos, Department of Molecular Biology
and Genetics, Democritus University of Thrace, University Campus,
Dragana, 68100 Alexandroupolis, Greece, Tel/Fax (office) +302551030620,
Ext.77620, Tel (lab) +302551030615, http://utopia.duth.gr/~glykos/
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