From: farzad kiani (farzad_kiani1364_at_yahoo.com)
Date: Mon Dec 10 2012 - 09:47:00 CST
Hi, 
I want to make psf file for carbon nanotube
I used below tcl in VMD
package require topotools 
topo retypebonds 
topo guessangles 
topo guessdihedrals 
mol reanalyze 0 
animate write psf cnt.psf 
but in psf file there is no atom name
 PSF
       1 !NTITLE
 REMARKS VMD-generated NAMD/X-Plor PSF structure file
    1658 !NATOM
       1      1    C    C    C      0.000000       12.0110           0
I am adding name manually to psf file, but when I run it by namd X-polar psf error happen
Dose anyone know what should I do?
thanks a lot
Kiani
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