acylated and amidated parameters.

From: Martin, Erik W (
Date: Wed Nov 14 2012 - 11:45:32 CST

Hi, I was wondering if anyone knew of any generic parameters for acylated and amidated amino acids. I'm thinking of simulating binding of some small peptides a colleague of mine measured experimentally when he had the peptides synthesized he had them N-terminal acylated and C terminal amidated. If anyone knows of some parameter sets, it would make my life easier. I'd use either charmm or amber.


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