compiling namd-2.9 on bluegeneQ

From: Zhuyi Xue (alfred532008_at_gmail.com)
Date: Mon Oct 15 2012 - 15:46:40 CDT

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I have compiled charm++, tcl, and fftw, all are set, but when compiling
namd-2.9, I constantly get the following error.

bgxlC -I/home/p/pomes/zyxue/Downloads/charm/mpi-bluegeneq-xlc/include
-DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN
-I/home/p/pomes/zyxue/zx_local/tcl-8.4.19/include -DNAMD_TCL
-I/home/p/pomes/zyxue/zx_local/fftw-2.1.5/include -DNAMD_FFTW
-DFFTW_ENABLE_FLOAT -DNAMD_FFTW_NO_TYPE_PREFIX -DNAMD_VERSION=\"2.9\"
-DNAMD_PLATFORM=\"BlueGeneQ-MPI-bg\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY
-DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -Q
-qalias=noallptrs:notypeptr -qdebug=plst3:cycles -DFFTW_ENABLE_FLOAT -tb
-B/home/p/pomes/zyxue/exec/namd-2.9/BlueGeneQ-MPI-xlC/ -o
obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1930.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase2.h", line 32.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
"src/ComputeNonbondedBase.h", line 1956.9: 1540-1401 (I) An unknown "pragma
ivdep" is specified.
1586-409 (U) File
"<DIRWHERENAMDISBUILT>/namd-2.9/BlueGeneQ-MPI-xlC/xlCcode" not found.
make: *** [obj/ComputeNonbondedStd.o] Error 1

I have no idea and didn't find any useful information about this xlCcode
file, so clue how to fix it, either.
Could anyone please explain?

My config options are

./config BlueGeneQ-MPI-xlC \
    --charm-base ./charm \
    --charm-arch mpi-bluegeneq-xlc \
    --with-tcl \
    --tcl-prefix ./tcl-8.4.19 \
    --with-fftw \
    --fftw-prefix ./fftw-2.1.5 \
    --arch-suffix bg

Thank you!

Regards,
Zhuyi

• Next message: JC Gumbart: "postdoc position available"
• Previous message: Aron Broom: "Re: Vacuum simulations"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

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