outputting atom coordinated

From: Jacqueline Schmidt (jacqueline_schmidt_1983_at_yahoo.com)
Date: Sun Sep 16 2012 - 16:17:25 CDT

Dear Namd users, I want to use the Tcl Force commands to print the coordinates of a selected set of atoms onto a separate file. Should I include the tcl force section before the "run" in namd configuration? or it doesn't matter?  Second how do I redirect the coordinated into a separate file?  Thanks! jackie  PS: I need the coordinates more often than what I'd output the dcd. That is why I am trying to use tclForces!

This archive was generated by hypermail 2.1.6 : Tue Dec 31 2013 - 23:22:34 CST