connect a spring between all the atoms present in pdb structure

From: SONY kaur (
Date: Sat Aug 04 2012 - 04:31:42 CDT

Hi ,
          I want to create a network model of protein in which two atoms
are connected by springs. Generally this done in vmd by " label addspring
molid atomid1 atomid2 k. If i want to do for entire protein , how can i do
that . How to store this structure with springs between atoms.

Ph.D student,

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