rmsd calculation in namd

From: Guanglei Cui (amber.mail.archive_at_gmail.com)
Date: Fri Sep 07 2012 - 14:57:59 CDT

Hi everyone,

can someone let me know if it's possible to define the rmsd collective
variable such that the overlay and rmsd calculation are done on
separate sets of atoms? Thanks very much.

Regards,
Guanglei

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