AW: Reflecting boundary z axis in NAMD

From: Norman Geist (
Date: Wed Sep 05 2012 - 01:38:44 CDT

If the upper or lower side of the surface doesn't differ and the box is
periodic, it doesn't matter which side the polymer will choose for
interaction, or?


Norman Geist.


Von: [] Im Auftrag
von Ganesh Kamath
Gesendet: Dienstag, 4. September 2012 21:11
Betreff: namd-l: Reflecting boundary z axis in NAMD


 Hi Folks,
   I am trying to run this polymer with a surface on the one of the faces of
  the cube.
  Is there an option for using reflecting wall for this surface.

  Any help will be greatly appreciated.


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