From: Ajith Rathnaweera Rajapaksha Mudalige (arajapak_at_purdue.edu)
Date: Fri Apr 20 2012 - 17:05:28 CDT
Is it possible to write a script for a NAMD simulation to access VMD at each time step through Interactive Molecular Dynamics mode (or any other possible way).
In my simulation I need to execute some VMD commands at each time step and define a new force according to the results output from VMD.
I highly appreciate if someone could shed some light in this direction.
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