User-defined forces in NAMD

From: Ali Ghaffaari (
Date: Tue Apr 10 2012 - 06:38:13 CDT


I'm not skilled in MD. I have question about force field using NAMD. As I
read in a NAMD documentation, it's using five potential energies: U(bond),
U(angle), U(dihedral), U(vdW), and U(Coulomb). I want to simulate a protein
by using a custom potential function for each atom rather than these five
potential energies. How can I do that? Is it possible by using NAMD? or
other MD tools?

Thanks a lot,

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