conf file question

From: Molecular Dynamics (moleculardynamics_at_yahoo.com)
Date: Wed Mar 21 2012 - 04:19:57 CDT

Dear namd experts,   I want to perform 10 ns md simulation for 1000 record in NVT ensamble for analysis of the system. To do this I searched for restart files and examined lots of files which are different from each other. Then I generated a restart conf file that starts from the last step in namd.out file . But I’m confused about restart procedure. And I’m not sure if my restart conf file is true for 10 ns with 1000 record . So I need an expert help . Could you please look over the attached conf file and share your thoughts with me ?     Best regards.   WRITING EXTENDED SYSTEM TO RESTART FILE AT STEP 2512500 WRITING COORDINATES TO DCD FILE AT STEP 2512500 WRITING COORDINATES TO RESTART FILE AT STEP 2512500 FINISHED WRITING RESTART COORDINATES The last position output (seq=2512500) takes 0.006 seconds, 869.734 MB of memory in use WRITING VELOCITIES TO RESTART FILE AT STEP 2512500 FINISHED WRITING RESTART VELOCITIES The last velocity output (seq=2512500) takes 0.004 seconds, 869.734 MB of memory in use WRITING FORCES TO DCD FILE AT STEP 2512500 The last force output (seq=2512500) takes 0.001 seconds, 868.934 MB of memory in use WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 2512500 CLOSING EXTENDED SYSTEM TRAJECTORY FILE WRITING COORDINATES TO OUTPUT FILE AT STEP 2512500 CLOSING COORDINATE DCD FILE The last position output (seq=-2) takes 0.087 seconds, 869.355 MB of memory in use WRITING VELOCITIES TO OUTPUT FILE AT STEP 2512500 CLOSING FORCE DCD FILE The last velocity output (seq=-2) takes 0.070 seconds, 868.676 MB of memory in use ====================================================   WallClock: 151413.078125  CPUTime: 151413.078125  Memory: 868.675781 MB End of program

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