From: oguz gurbulak (gurbulakoguz_at_yahoo.com)
Date: Tue Jan 03 2012 - 03:08:58 CST
Thanks for all replies. I successfully generated a a representation with Create Rep selection writing "segname water" into the selected atoms bar.
From: Boyang Wang <pkuwangboyang_at_gmail.com>
To: Norman Geist <norman.geist_at_uni-greifswald.de>
Cc: oguz gurbulak <gurbulakoguz_at_yahoo.com>; Namd Mailing List <namd-l_at_ks.uiuc.edu>
Sent: Tuesday, January 3, 2012 10:51 AM
Subject: Re: namd-l: water molecules
I think you can either select a few water molecules, or carefully select all the water molecules. Go to representation and choose vdw, it will show.
On Tue, Jan 3, 2012 at 2:34 PM, Norman Geist <norman.geist_at_uni-greifswald.de> wrote:
>firstly I have to say that there is a dedicated mailings list for vmd, too.
>But I think what you mean is maybe representation “beads” or you could use “vdw” for that with a coloring method “coloreid” and the right color.
>Von:owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von oguz gurbulak
>Gesendet: Montag, 2. Januar 2012 13:04
>Betreff: namd-l: water molecules
>Dear NAMD users,
>How can I represent water molecules ( or any segment in psf loaded dcd file ) with red balls ( ball representation ) in VMD ?
>Thanks for your help.
Boyang Wang, Ph.D.
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