Re: water molecules

From: oguz gurbulak (
Date: Tue Jan 03 2012 - 03:08:58 CST

Thanks for all replies. I successfully generated a  a representation with Create Rep selection writing "segname water" into the selected atoms bar. ________________________________ From: Boyang Wang <> To: Norman Geist <> Cc: oguz gurbulak <>; Namd Mailing List <> Sent: Tuesday, January 3, 2012 10:51 AM Subject: Re: namd-l: water molecules I think you can either select a few water molecules, or carefully select all the water molecules. Go to representation and choose vdw, it will show.   Best, Boyang On Tue, Jan 3, 2012 at 2:34 PM, Norman Geist <> wrote: Hi, >  >firstly I have to say that there is a dedicated mailings list for vmd, too. >  >But I think what you mean is maybe representation “beads” or you could use “vdw” for that with a coloring method “coloreid” and the right color. >  >Norman Geist. >  > [] Im Auftrag von oguz gurbulak >Gesendet: Montag, 2. Januar 2012 13:04 >An: >Betreff: namd-l: water molecules >  >Dear NAMD users, >  >How can I represent water molecules ( or any segment in psf loaded dcd  file ) with red balls ( ball representation ) in VMD ? >  >Thanks for your help. -- Boyang Wang, Ph.D.

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