equilibrate water molecules

From: Hasan haska (hasanhaska_at_yahoo.com)
Date: Thu Nov 24 2011 - 01:43:38 CST

Dear Namd users, I'm running some md simulations ( NPT ) to equilibrate the 1000 water molecules in a  rectangular box. I want to learn the density of the system at the end of the simulation and compare it with the experimental density if the system reach the equilibrium. How can I learn the density of the system in namd ? and is there any other ways to learn if the system get equilibrate? Thanks for your help.

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