From: Nikhil Kumar Mittal (nikhil_at_hpclinks.com)
Date: Fri Nov 11 2011 - 19:56:39 CST
Resending .... (the message was cut-off for unknown reason),
From: Nikhil Kumar Mittal [mailto:nikhil_at_hpclinks.com]
Sent: 11 November 2011 11:41 PM
Subject: ERROR: Atoms moving too fast;
I downloaded the NAMD 2.8 source code and built it on my CentOS 5.6 x86 64 bit
system with CUDA and OpenMPI enabled (I followed steps given in the notes.txt
and my build of namd2 ran fine without any problems).
I am using OpenMPI 1.4.3 and CUDA 4.0 (2 Tesla M2070 on one node).
When I run namd2 as a single process using stmv.namd it works fine. But as soon
as I increase the processes to 2 or more, I get following error:
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