Using CHARMM Compatible Amber Parameters

From: Ehsan Ban (
Date: Wed Oct 19 2011 - 20:10:30 CDT

Hi Everyone,

I'm trying to use CHARMM compatible Amber parameters to simulate dsdna from:

Because Amber and CHARMM use different values to convert charge values to
kcal/mol changes should be made to CHARMM program's pref.dat to work with
these parameter files. Does anyone know how to get around this in NAMD?

Ehsan Ban
Rensselaer Polytechnic Institute

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