From: Hasan haska (hasanhaska_at_yahoo.com)
Date: Thu Sep 22 2011 - 08:37:27 CDT
Dear Namd users,
I learned that getting the force for
each atom as a pdb file is a new feature of namd 2.8 version. I installed namd 2.8
version to get net forces on each atom but I couldnâ€™t understand the
explanation â€śNet forces on each atom can be written to PDB or binary output
files using the Tcl output command as "output withforces basename" â€ť .
What should I do to get a force pdb file ? What is the meaning ofÂ â€śbasenameâ€ť ? Could you please help me to
learn this operation ?
Thanks for your help.
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