AW: save the last frame as a pdb file using dcd file

From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Thu Sep 22 2011 - 03:15:43 CDT

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You can easily use vmd for that. Load your topology file. Load your DCD. Save coordinates as pdb for last frame through the menu. You can auto this with writing a little tcl script and call it with vmd. Or you can use the command “catDCD” for commandline which maybe fits your needs good also.
 
Good luck
 
Norman Geist.
 
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Namd Namd
Gesendet: Donnerstag, 22. September 2011 09:03
An: namd-l_at_ks.uiuc.edu
Betreff: namd-l: save the last frame as a pdb file using dcd file
 
Dear All,
 
How can I save the last frame as a pdb file using dcd file ?
 
Could you please help me to learn this procedure ?
 
Thanks for your help.
 
All the best.
 
 
 
 

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