From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Thu Sep 22 2011 - 03:15:43 CDT
You can easily use vmd for that. Load your topology file. Load your DCD. Save coordinates as pdb for last frame through the menu. You can auto this with writing a little tcl script and call it with vmd. Or you can use the command “catDCD” for commandline which maybe fits your needs good also.
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Namd Namd
Gesendet: Donnerstag, 22. September 2011 09:03
Betreff: namd-l: save the last frame as a pdb file using dcd file
How can I save the last frame as a pdb file using dcd file ?
Could you please help me to learn this procedure ?
Thanks for your help.
All the best.
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