From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Mon Sep 05 2011 - 08:22:55 CDT
For the RMSD there are plenty of scripts. Search the archives or go through
For the diffusion coefficients I found this today:
Haven't tested it yet.
PS: this is a is better suited question for the VMD mailing list.
On Mon, Sep 5, 2011 at 15:15, Molecular Dynamics <
> Dear Namd users,
> Is there any script in VMD (tcl) that can calculate mean square
> displacement and D diffusion coefficient ?
> Anyone who has an idea to share with me, I would be appreciated.
> Thanks in advance
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