From: Ehsan Ban (
Date: Sat Aug 13 2011 - 02:47:27 CDT

To do so I think you can load the .coor file along the psf file into VMD.
Then find TK Console under the Extensions menu. Type this line:
cd c:
(or any other address of your choice). Then run this line:
[atomselect top all] writepdb newfile.pdb

This will create the pdb file and put it in the drive "c".

I hope this helps.

On Sat, Aug 13, 2011 at 2:11 AM, Babban Mia <> wrote:

> I was suggested that .coor file can be simply converted to pdb format by
> typing the following in the terminal or bash shell script.
> cp myfile.coor myprot.pdb
> I tried but it does not seem to work.Please advise further
> Best
> Babban

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