Re: distortion of some bonds during structure preparation

From: bharat gupta (
Date: Mon Jul 04 2011 - 03:36:39 CDT


I generated a pdb and psf of Green fluorescent protein with one mutated
residue (Arg 85). After checking the structure in VMD I found , that the
bond between Arg 85 and more residue Tyr 82 got distorted.. During the
structure generation I didn't get any error... how to rectify this ??

Ph.D. Candidate

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