From: amit banerjee (amit_informatics_at_yahoo.com)
Date: Mon Jun 06 2011 - 00:18:48 CDT
Thanks for your reply, actually I wanted to know whether residue_rmsd.tcl script
runs for both water sphere and water box based generated trajectories.
Could you please help me out with the distance.tcl script. I was not able to run
the default script provided with the tutorial.
Thanks and Regards,
From: Ada Zhan <zyqfrog10_at_msn.com>
To: amit_informatics_at_yahoo.com; namd-l_at_ks.uiuc.edu
Sent: Fri, June 3, 2011 12:36:00 AM
Subject: RE: namd-l: question on residue rmsd.tcl
residue_rmsd.tcl runs for protein. It does nothing to do with water.
Date: Wed, 1 Jun 2011 20:49:17 -0700
Subject: namd-l: question on residue rmsd.tcl
Please let me know whether residue_rmsd.tcl script will
run for water sphere trajectories? Becuase in the NAMD tutorial it is given for
water box models.
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