Re PMF

From: Branko (bdrakuli_at_chem.bg.ac.rs)
Date: Sat May 28 2011 - 12:18:22 CDT

Jafar,

Take a look on ABF tutorials
(http://www.ks.uiuc.edu/Training/Tutorials/namd/ABF/tutorial-abf.pdf)
and NAMD ug, under
http://www.ks.uiuc.edu/Research/namd/2.8b3/ug/node56.html#SECTION000133100000000000000
Everything will be ease after that

Branko

Dear user NAMD

I have simulated a nano tube in water and ion.
I want to calculate PMF ions.
I read tutorial NAMD and user guide NAMD.I can not find a good example
for calculation PMF ions.
can you help me?

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